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Installation

SeqNado can be installed using either mamba or pip. Follow the steps below to set up the package:

Prerequisites

Before installing SeqNado, ensure that you have the following tools installed on your system:

  • Mamba/Conda: Required for managing environments and dependencies. Install Conda from Miniconda or Anaconda, and then install Mamba: 

    conda install -n base -c conda-forge mamba

  • Pip: Comes pre-installed with Python. Verify installation: 

    pip --version

If these tools are not installed, follow the links provided to set them up before proceeding with SeqNado installation.

Install from Bioconda

SeqNado is available on Bioconda. To install: 

mamba install -c bioconda seqnado

Install from PyPI

SeqNado is also available on PyPI. To install: 

pip install seqnado

Initialize after install

Once installed, initialize SeqNado in your environment:

seqnado init

For all flags and details, see the CLI reference: seqnado init.

See Also: